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SSEA Download page

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This page contains the instructions for downloading the SSEA package for protein secondary structure element alignment. The package is currently available as pre-compiled executables for Linux platforms. It has been extensively tested under Debian kernel 2.4.x with g++ compiler v 2.95 for 32-bit architectures.

Download:

Linux executables, Version 1.1 (21/07/2004)
Fold Libraries, updated 04/04 (21/07/2004)

The source code of the main SSEA executable is available as part of the Align package.

Instructions:

The executables come as a ".tar.gz" file, meaning that they have to be untarred and unzipped. To do this, type:

$> cd wherever-you-downloaded-the-package

$> tar xvfz Ssea-package-name.tar.gz 

$> cd Ssea

$> cat README

In the Ssea directory you will find the README file containing the detailed installation instructions.

The fold libraries contain preformatted secondary structure files for the representative PDB90, PDB40, SCOP90 and SCOP40 sets. These can be used in the SSEA database alignment mode. The library is also a ".tar.gz" file, so please follow the instructions above to install them.

If you encounter any problems using the software, please contact the author at silvio@cribi.unipd.it.

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